3D Medical Reconstruction (GE --large and slow to load, but a number of animations)
Biomedical Visualization Laboratory at University of Illinois
Medical Imaging on the World-Wide Web (University of Leeds)
Johns Hopkins University Medical Imaging Lab
Journal of Computer Aided Molecular Design
Medical Imaging Center from UC Irvine (an astounding array of links)
Medical Imaging and Scientific Visualization servers from U. Penn
Human Visual Cognition (Brown)
Digital Anatomist at U. Washington [6 December 2012: No Bones About Med Student's Anatomy Resources may be a useful replacement for the now-dead link]
Whole Brain Atlas (Harvard/MIT)
Neuroanatomy Study Slides (Tulane)
Brainiac (commercial interactive neuroanatomy atlas)
Street Map of the Mind (watching the brain in action using MRI)
The Tree of Life (A Phylogenetic Navigation System for the Internet, from U. Arizona)
NIH Laboratory of Structural Biology
X-PLOR ("...a program system for computational structural biology. It is designed for exploration of the conformational space of macromolecules restrained to regions defined by both empirical energy functions and experimental data. The main use of X-PLOR is the refinement of structures determined by X-ray crystallography or nuclear magnetic resonance (NMR)...")
SIGMA: System for Integrated Genome Map Assembly ("... a graphical database tool designed for building and viewing integrated genome maps. A number of human and yeast chromosomes are currently available for viewing.")
The Representation of Molecular Models Rendering Techniques (a textbook from University of Geneva)
Monosaccharide Browser (University of Leeds)
A User Guide to Macromolecular Modeling (about MC-SYM [Macromolecular Conformations by SYMbolic computation], but a tidy introduction to general problems as well)
Protein Motions Database (Stanford)
DBGET : Integrated Biochemistry/Genetics Database Retrieval System ("...a simple database retrieval system to search and extract entries from a number of biochemistry/genetics/protein databases. The following databases are included and searchable: GenBank (nucleic acid sequence database); EMBL (nucleic acid sequence database); SWISS-PROT (protein sequence database); PIR (protein sequence database); PRF (protein sequence database); LITDB (PRF protein/peptide literature database); PDB (Brookhaven Protein Data Bank); PDBSTR (Re-organized Protein Data Bank); PROSITE (Dictionary of protein sites and patterns); LIGAND (Ligand chemical database for enzyme reactions); PMD (Protein Mutant Database); AA-Index (Amino Acid index database); and, OMIM (Online Mendelian Inheritance in Man")
Nanoworld Home Page (Centre for Microscopy and Microanalysis, University of Queensland)